Assuming one had access to old cpus, ram, harddrives, and mainboards with io connections and bios chips and other chips in them.
Realistic scenario, many people have that lying around. If it still works as a PC, we call it an old computer, if it doesn't work, we call this electronic waste.
assuming all of the advanced parts, … were already available, how would one connect them to make an operable computer.
By building the same, very complex, boards computer manufacturers design and manufacture. Even the simplest 15 year old laptop motherboard takes person-months to design, build and test.
The purpose is empowerment by piecing together components to custom make laptops.
Then you'd need to design a laptop for exactly the parts you have. The prototype costs for that, the equipment to measure even oooooold laptop buses and the time designing this: orders of magnitudes more expensive than a new top-class laptop. And the design, prototype and measurement costs would re-occur for every single new old component you want to deal with.
By the way, honestly, someone who can take a bunch of hardware that's not documented and design a working computer out of it: That's not someone who's going to need much empowerment. That is an omniscient being who can look back in time and know how something works without any documentation ;)
But this all makes no sense: you have old hardware containing these components. That already works. So, keep that. If it doesn't work, it's broken, and the salvage, characterization, re-manufacturing (even if one had a design readily lying around, which nobody does!) costs are way more expensive than top-notch new laptops.
So, electronic waste.
if you're just concerned with how to physically make PCBs that you can use for computer hardware of the last 30 or so years: Not going to happen. You need multiple layers to get all the signals out of such high density components, you need very well-controlled sizes to achieve signal quality as necessary, and you need to have not a single error in tens of thousands of connections. That's why you need a PCB manufacturer; it's a high-precision, high-investment, high-expertise business building computer motherboards. That's not out of bad will or anything – it's just the result of the physics involved: compactness and the relatively high speed. If you want a computer at the functionality level of 1970s computers, OK, that's a different problem, but then, microcontroller boards that can do way more than these cost low single-digit Euros these days – there's nothing you can do to achieve anything similar at lower cost, or comparable performance.